PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504400.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26031.6 Da    PI: 8.684
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF1009.2e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  XP_004504400.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                    79***********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.515161IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.67E-34280IPR002100Transcription factor, MADS-box
CDDcd002656.90E-45276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-33323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-333859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.15889175IPR002487Transcription factor, K-box
PfamPF014865.9E-1991165IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMLKTLERY QKCNYGAPET NVSTREALEL SSQQEYLKLK ARYEALQRSQ RNLMGEDLGP  120
LSSKELESLE RQLDTSLQQI RSTREHMLSE ANRSLRQRLE RYQLNQLQMN HCVEEMGYGR  180
HPSQTHGDGL FQQMECEPTL QIGYQADPGS VVAAGPSMSN YMAGWLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_D2e-34751591101Developmental protein SEPALLATA 3
4ox0_C2e-34751591101Developmental protein SEPALLATA 3
4ox0_B2e-34751591101Developmental protein SEPALLATA 3
4ox0_A2e-34751591101Developmental protein SEPALLATA 3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX3907180.0JX390718.1 Medicago polyceratia SEPALLATA3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504400.11e-168PREDICTED: MADS-box transcription factor 1-like isoform X4
SwissprotO658741e-135MTF1_PEA; MADS-box transcription factor 1
TrEMBLG7LHA31e-152G7LHA3_MEDTR; MADS-box transcription factor
STRINGGLYMA05G28140.31e-146(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-112MIKC_MADS family protein